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#################################### |
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## R environment customization script |
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# to automate package installation |
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# repo is maintained at http://bit.ly/r-customize-script |
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#################################### |
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## To run execute in a terminal: |
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# Rscript r-customize.R # depends on R being installed |
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#################################### |
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## Some relevant links |
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# Rstudio's Quick list of useful R packages: http://bit.ly/useful_R_packages |
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#################################### |
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## Basic packages |
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################# |
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install.packages("devtools") |
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library(devtools) # to install from source (eg; github) |
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install.packages("downloader") |
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install.packages("checkpoint") |
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install.packages("rJava") |
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install.packages("xlsxjars") |
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install.packages("xlsx") |
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install.packages("data.table") |
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install.packages(c("Hmisc", "jpeg")) |
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install.packages("RJSONIO") # also required for "WDI" |
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# DataTables see: https://rstudio.github.io/DT/ |
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# installs an R interface to the Js DataTables |
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# will ask to select a server |
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if (!requireNamespace('htmlwidgets') || packageVersion('htmlwidgets') <= '0.3.2') |
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install_github('ramnathv/htmlwidgets') |
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install_github('rstudio/DT') |
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install.packages("xtable") |
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# Web scraping |
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############## |
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install.packages("XML") # read & create XML docs |
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install.packages("rvest") # XML & httr wrappers to make it easy to download & manipulate html & xml. |
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install.packages(c("httr", "rjson")) # required for "Rfacebook" |
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install.packages("jsonlite") |
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install.packages("RCurl") |
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## Data Wrangling |
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################# |
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install.packages(c("dplyr", "reshape2")) |
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install.packages("tidyr") |
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install.packages("sqldf") # Manipulate R data frames using SQ |
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## Swirl |
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# Learn R, in R. http://swirlstats.com |
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install.packages("swirl") |
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# install_github("swirldev/swirl") # latest development version |
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# Visualization |
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############### |
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install.packages("ggplot2") |
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install.packages("ggvis") |
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install.packages("gridExtra") |
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# R interface to dygraphs |
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if (!requireNamespace('htmlwidgets')) |
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install_github('ramnathv/htmlwidgets') |
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install_github('rstudio/dygraphs') |
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# Shiny Apps |
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install_github('rstudio/shinyapps') |
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# download("https://github.com/rstudio/shinyapps/archive/master.tar.gz", "shinyapps.tar.gz") |
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# install.packages("shinyapps.tar.gz", repos = NULL, type = "source") |
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# Plotly |
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install_github("ropensci/plotly") |
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# download("https://github.com/ropensci/plotly/archive/master.tar.gz", "plotly.tar.gz") |
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# install.packages("plotly.tar.gz", repos = NULL, type = "source") |
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install.packages("maptools") # for shapefiles |
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# install.packages("rgeos") # required by maptools |
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# rMaps (still under development) # https://rmaps.github.io/ |
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# rCharts required for some (experimental) features |
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if (!requireNamespace('rCharts')) |
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install_github('ramnathv/rCharts@dev') |
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install_github('ramnathv/rMaps') |
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# Google Vis |
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install.packages("googleVis") |
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## Leaftlet |
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# R package to create interactive web-maps based on the Leaflet JavaScript library |
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install.packages("leafletR") |
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# install_github("chgrl/leafletR") |
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install_github("rstudio/leaflet") # by Rstudio |
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# Documents |
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########### |
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# for Knitr |
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install.packages("yaml"); install.packages("htmltools"); install.packages("rmarkdown") |
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# Slidify & Libraries |
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install_github('ramnathv/slidify') |
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install_github('ramnathv/slidifyLibraries') |
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# Spatial & GIS |
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############### |
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install.packages("sp") # classes and methods for spatial data |
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install.packages("maptools") # Tools for Reading and Handling Spatial Objects |
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install.packages("maps") # Draw Geographical Maps |
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install.packages("ggmap") # Spatial Visualization with Google Maps and OpenStreetMap |
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install.packages("raster") |
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install.packages("mapdata") |
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install.packages("mapproj") |
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install.packages("gpclib") |
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install.packages("rdgal") |
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install.packages("Rgooglemaps") |
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install.packages("rgeos") |
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install.packages("rasterVis") |
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# Connections |
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############# |
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# API's |
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install.packages("streamR") # Access to Twitter Streaming API via R # github: https://github.com/pablobarbera/streamR |
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install.packages("Rfacebook") # provides an interface to the Facebook API |
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# Connect to Databases |
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install.packages("DBI") # database interface (DBI) definition for communication between R and relational database management systems |
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install.packages("RMySQL") # DBI-compliant Interface to MySQL and MariaDB Databases |
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install.packages("dbConnect") # Provides a graphical user interface to connect with databases that use MySQL |
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# Data scources |
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install.packages("Quandl") |
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install.packages("WDI") #github.com/vincentarelbundock/WDI |
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# Big Data |
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########## |
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# Packages to deal with datasets larger than RAM |
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install.packages("bigmemory") # Manage massive matrices with shared memory and memory-mapped files |
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# Medical packages |
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install.packages("oro.dicom") |
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# Machine Learning & Predictive Modeling |
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######################################## |
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## caret – Classification And REgression Training |
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install.packages("caret") |
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install.packages("e1071") # needed when fitting a model in caret |
Ibrahim El Merehbi 
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